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1. Comparative flavivirus host protein interaction mapping reveals mechanisms of dengue and Zikavirus pathogenesis.
Priya S. Shah, Nichole Link, Gwendolyn , Jang Phillip P. Sharp,Tongtong Zhu,Danielle L. Swaney, Jeffrey R. Johnson, John Von Dollen, Holly R. Ramage, Laura Satkamp, Billy Newton, Sebastian Aguirre, Ruth Hüttenhain, Marine J. Petit, Tierney Baum, Amanda Everitt, Orly Laufman, Michel Tassetto, Michael Shales, Erica Stevenson, Gabriel N. Iglesias, Leila Shokat, Shashank Tripathi et al, Nevan J. Krogan.
Cell, 2018 Dec; 175(7):1931-45.

2. An Immunocompetent Mouse Model of Zika Virus Infection.
Matthew J. Gorman, Elizabeth A. Caine, Konstantin Zaitsev, Matthew C. Begley, James Weger-Lucarelli, Melissa B. Uccellini, Shashank Tripathi et al, Adolfo Garcia-Sastre and Michael S. Diamond
Cell Host & Microbe. 2018 May; 23(5):672-685.e6.

3. Specific mutations in the PB2 protein of influenza A virus compensate for the lack of efficient IFN antagonism of the NS1 protein of bat influenza A-like viruses. Aydillo T, Ayllon J, Pavlisin A, Martinez-Romero C, Tripathi S, Mena I, Moreira-Soto A, Vicente-Santos A, Corrales-Aguilar E, Schwemmle M, García-Sastre A.
Journal of virology. 2018 Jan: JVI-0202.

4. Enhancement of Zika virus pathogenesis by preexisting antiflavivirus immunity. Bardina SV*, Bunduc P*, Tripathi S*, Duehr J*, Frere JJ, Brown JA, Nachbagauer R et al, Lim JK.
Science. 2017 Apr; 356(6334):175-80. (* Equal Contribution)

5. Dengue virus NS2B protein targets cGAS for degradation and prevents mitochondrial DNA sensing during infection.
Sebastian Aguirre, Priya Luthra, Maria T. Sanchez-Aparicio, Ana M. Maestre, Jenish Patel, Francise Lamothe, Anthony C. Fredericks, Shashank Tripathi, et al, Ana Fernandez-Sesma.
Nature microbiology. 2017 May; 2(5):17037.

6. A novel Zika virus mouse model reveals strain specific differences in the virus pathogenesis and host inflammatory immune response.
Shashank Tripathi, Vinod Balasubramaniam, Julia A. Brown, Ignacio Mena, Alesha Grant et al, Adolfo García-Sastre.
PLoS pathogens. 2017 Mar; 13(3):e1006258.

7. Systems-based Analysis of RIG-I-dependent Signaling Reveals that KHSRP Regulates Accessibility of Viral PAMPs for Innate Sensing.
Stephen Soonthornvacharin, Ariel Rodriguez-Frandsen, Yingyao Zhou, Shashank Tripathi et al, Sunnie Yoh and Sumit K. Chanda.
Nature microbiology. 2017 May; 2(5):17022.

8. Antiviral innate immunity through the lens of systems biology.
Tripathi S, Garcia-Sastre A. 
Virus Research. 2016 Jun; 218:10-7.

9. Zika Virus Targets Human STAT2 to Inhibit Type I Interferon Signaling.
Grant A, Ponia SS, Tripathi S et al, García-Sastre A.
Cell Host & Microbe. 2016 Jun; 19(6):882-90.

10. Targeting Viral Proteostasis Limits Influenza Virus, HIV, and Dengue Virus Infection.
Heaton NS, Moshkina N, Fenouil R, Gardner TJ, Aguirre S, Shah PS, Zhao N, Manganaro L, Hultquist JF, Noel J, Sachs D, Hamilton J, Leon PE, Chawdury A, Tripathi S et al, Marazzi I.
Immunity. 2016 Jan; 44(1):46-58.

11. Human Heat shock protein 40 (Hsp40/DnaJB1) promotes influenza A virus replication by assisting nuclear import of viral ribonucleoproteins.
Batra J*, Tripathi S*, Kumar A, Katz JM, Cox NJ, Lal RB, Sambhara S, Lal SK.
Scientific reports. 2016 Jan; 6:19063. (* Equal Contribution)

12. Meta- and Orthogonal Integration of Influenza “OMICs” Data Defines a Role for UBR4 in Virus Budding.
Tripathi S*, Pohl MO*, Zhou Y, Rodriguez-Frandsen A et al, König R, Stertz S, García-Sastre A, Chanda SK.
Cell host & microbe. 2015 Dec; 18(6):723-35. (* Equal Contribution)

13. Interplay between influenza A virus and host factors: targets for antiviral intervention.
Tripathi S*, Batra J*, Lal SK. 
Archives of Virology. 2015 Aug; 160(8):1877-91. (* Equal Contribution)

14. Enhancement of the proapoptotic properties of newcastle disease virus promotes tumor remission in syngeneic murine cancer models.
Cuadrado-Castano S, Ayllon J, Mansour M, de la Iglesia-Vicente J, Jordan S, Tripathi S, García-Sastre A, Villar E.
Molecular Cancer Therapy. 2015 Mar; 14(5);1247-58.

15. Influenza A viral nucleoprotein interacts with cytoskeleton scaffolding protein α-actinin-4 for viral replication.
Sharma S, Mayank AK, Nailwal H, Tripathi S et al, Lal SK.
The FEBS journal. 2014 Jul; 281(13):2899-914.

16. Influenza A virus nucleoprotein induces apoptosis in human airway epithelial cells: implications of a novel interaction between nucleoprotein and host protein Clusterin.
Tripathi S, Batra J, Cao W, Sharma K et al, Lal SK.
Cell death & disease. 2013 Mar; 4(3):e562.

17. Influenza A virus nucleoprotein exploits Hsp40 to inhibit PKR activation.
Sharma K* , Tripathi S*, Ranjan P, Kumar P et al, Lal SK. (* Equal Contribution)
PLoS One. 2011 Jun; 6(6):e20215

18. Infection of lung epithelial cells with pandemic 2009 A(H1N1) influenza viruses reveals isolate-specific differences in infectivity and host cellular responses.
Patel JR, Vora KP, Tripathi S, Zeng H, Tumpey TM, Katz JM, Sambhara S, Gangappa S. 
Viral Immunology. 2011 Apr; 24(2):89-99.